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Software Data Papers People


pic_paper7 Klein, A, Tourville, J. 2012.
101 labeled brain images and a consistent human cortical labeling protocol.
Frontiers in Brain Imaging Methods. 6:171.
Data and software (supplementary website)
Synapse website
pic_paper2 Klein, A, Mensh, B, Ghosh, S, Tourville, J, Hirsch, J. 2005.
Mindboggle: Automated brain labeling with multiple atlases.
BMC Medical Imaging. 5:7. PMCID: PMC1283974
pic_paper1 Klein, A, Hirsch, J. 2005.
Mindboggle: A scatterbrained approach to automate brain labeling.
NeuroImage. 24(2): 261-280. PMID: 15627570


pic_pres16 Nichols BN, Poline JB, Poldrack RA, Klein A, Kwon D, Chu W, Pohl KM. 2015.
Implementing Semantics-Driven Data Exchange in Brain Science: The NCANDA Case Study.
Big Data to Knowledge All Hands Grantee Meeting. National Institutes of Health, Bethesda, MD.
pic_pres16 Klein, A, Chaibub Neto, E, Ghosh, S, ADNI. 2015.
Detailed shape analysis of healthy brains and brains with Alzheimer's disease.
Human Brain Mapping 2015 (Honolulu, Hawaii).
pic_pres16 Klein A, Nichols N and Haehn D. 2014.
Mindboggle 2 interface: online visualization of extracted brain features with XTK.
Front. Neuroinform. Conference Abstract: 5th INCF Congress of Neuroinformatics.
pic_pres16 Klein, A, Chaibub Neto, E, Giard, J, Bao, F, Hame, Y, Reuter, M, Tustison, N, Avants, B, Tourville, J, Dai, H, Nichols, N, Ghosh, S. 2014.
Shape analysis of 101 healthy human brains.
Human Brain Mapping 2014 (Hamburg, Germany).
pic_pres16 Klein, A, Bao, FS, Hame, Y, Stavsky, E, Giard, J, Haehn, D, Nichols, N, Ghosh, SS. 2012.
Mindboggle: Automated human brain MRI feature extraction, labeling, morphometry, and online visualization.
Neuroinformatics 2012 (Munich, Germany).
pic_pres14 Tourville, J, Klein, A. 2012.
101 labeled brains and a new human cortical labeling protocol.
Neuroinformatics 2012 (Munich, Germany).
pic_pres13.5 Lee, N, Laine, AF, Klein, A. 2011.
Towards a deep learning approach to brain parcellation.
IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011:321-324. doi:10.1109/ISBI.2011.5872414
pic_pres13 Bao, FS, Ghosh, SS, Giard, J, Parsey, RV, Klein, A. 2011.
Brain shape analysis for predicting treatment remission in major depressive disorder.
41st Annual Meeting for the Society for Neuroscience.
pic_pres12 Klein, A. 2011.
Mindboggle: an informatics framework for open research in quantifying the shape of the human brain.
BioImage Informatics II (talk at Janelia Farm).
pic_pres11 Lee, N and Klein, A. 2011.
A graph-based database of hierarchical brain features.
Frontiers in Neuroinformatics (Neuroinformatics 2011).
pic_pres9 Bao, F, Lee, N, Hame, Y, Im, K, Riviere, D, Li, G, Klein, A. 2011.
Automated extraction of nested sulcal features from human brain MRI data.
17th Annual Meeting for the Organization of Human Brain Mapping.
Synapse website
pic_pres8 Klein, A, Worth, A, Tourville, J, Landman, B, Dal Canton, T, Ghosh, SS, Shattuck, D. 2010.
An interactive tool for constructing optimal brain colormaps.
40th Annual Meeting for the Society for Neuroscience.
pic_pres7 Klein, A, Dal Canton, T, Ghosh, SS, Landman, B, Lee, J., Worth, A. 2010.
Open labels: online feedback for a public resource of manually labeled brain images.
16th Annual Meeting for the Organization of Human Brain Mapping.
pic_pres4 Klein, A. 2004.
Activity patterns in the brain: breaking up the problem into pieces.
International Conference on Complex Systems (ICCS2004 talk).
pic_pres3 Klein, A, Hirsch, J. 2003.
Mindboggle: new developments in automated brain labeling.
9th Annual Meeting for the Organization of Human Brain Mapping.
pic_pres2 Klein, A, Hirsch, J. 2002.
Fully-automated nonlinear labeling of human brain activity.
8th Annual Meeting for the Organization of Human Brain Mapping.
pic_pres1 Klein, A, Hirsch, J. 2001.
Automatic labeling of brain anatomy and fMRI brain activity.
7th Annual Meeting for the Organization of Human Brain Mapping.