Papers on brain labeling, registration, and image processing (by @rno)


Mindboggle references

Evaluation of volume-based and surface-based brain image registration methods
Arno Klein, Satrajit S. Ghosh, Brian Avants, B.T.T. Yeo, Bruce Fischl, Babak Ardekani, James C. Gee, J.J. Mann, Ramin V. Parsey.
2010. NeuroImage. 51: 214-220.   [doi:10.1016/j.neuroimage.2010.01.091]
[PDF]
[supplementary website]

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration
Arno Klein, Jesper Andersson, Babak A. Ardekani, John Ashburner, Brian Avants, Ming-Chang Chiang,
Gary E. Christensen, D. Louis Collins, James Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage,
Daniel Rueckert, Paul Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey.
2009. NeuroImage. 46(3): 786-802.    [doi:10.1016/j.neuroimage.2008.12.037]
[PubMedCentral]    [PDF]
[supplementary website]

Mindboggle: Automated brain labeling with multiple atlases
Arno Klein, Brett Mensh, Satrajit Ghosh, Jason Tourville, and Joy Hirsch
2005. BMC Medical Imaging. 5:7. [Full text]

Mindboggle: a scatterbrained approach to automate brain labeling
Arno Klein and Joy Hirsch
2005. NeuroImage. 24(2): 261-280. [PDF]

Conference presentations

Open labels: online feedback for a public resource of manually labeled brain images
Arno Klein, Tito Dal Canton, Satrajit S. Ghosh, Bennett Landman, Joel Lee, Andrew Worth.
2010. 16th Annual Meeting for the Organization of Human Brain Mapping. HBM2010 Poster

Evaluation of open-access, automated brain extraction methods on multi-site multi-disorder data
Brian Avants, Arno Klein, Nicholas Tustison, Jue Woo, and James C. Gee.
2010. 16th Annual Meeting for the Organization of Human Brain Mapping. HBM2010 Poster


For other publications by Arno Klein, please visit www.binarybottle.com