for all publications by Arno Klein, please visit www.binarybottle.com/papers.php
for Mindboggle primary references only, please visit Mindboggle citations
for Mindboggle primary references only, please visit Mindboggle citations
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Conference presentations |
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Brain shape analysis for predicting treatment remission in major depressive disorder Bao, FA, Ghosh, SS, Giard, J, Parsey, RV, Klein, A. 2011. 41st Annual Meeting for the Society for Neuroscience. |
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Mindboggle: an informatics framework for open research in quantifying the shape of the human brain Klein, A. 2011. BioImage Informatics II (talk at Janelia Farm). |
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A graph-based database of hierarchical brain features Lee, N and Klein, A. 2011. Frontiers in Neuroinformatics (Neuroinformatics 2011). doi:10.3389/conf.fninf.2011.08.00139 |
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Automatic detection of corrupted volumes in DTI data Peruzzo, D, Bertoldo, A, Parsey, R, Klein, A. 2011. 28th Annual Meeting for the European Society for Magnetic Resonance in Medicine and Biology. |
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Automated extraction of nested sulcal features from human brain MRI data Bao, F, Lee, N, Hame, Y, Im, K, Riviere, D, Li, G, Klein, A. 2011. 17th Annual Meeting for the Organization of Human Brain Mapping. |
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An interactive tool for constructing optimal brain colormaps Klein, A, Worth, A, Tourville, J, Landman, B, Dal Canton, T, Ghosh, SS, Shattuck, D. 2010. 40th Annual Meeting for the Society for Neuroscience. Website: www.braincolor.org/colors/ |
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Open labels: online feedback for a public resource of manually labeled brain images Klein, A, Dal Canton, T, Ghosh, SS, Landman, B, Lee, J., Worth, A. 2010. 16th Annual Meeting for the Organization of Human Brain Mapping. Website: www.braincolor.org/roygbiv/ |
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Evaluation of open-access, automated brain extraction methods on multi-site multi-disorder data Avants, B, Klein, A, Tustison, N, Woo, J, Gee, JC. 2010. 16th Annual Meeting for the Organization of Human Brain Mapping. Results (and code, 100KB) Atropos code and template (60MB) |
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An evaluation of volume- and surface-based nonlinear registration of human brain MRI data Klein, A, Ghosh, SS, Avants, B, Fischl, B, Yeo, T, Mann, JJ, Parsey, RV. 2009. 15th Annual Meeting for the Organization of Human Brain Mapping. |
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Activity patterns in the brain: breaking up the problem into pieces Klein, A. 2004. International Conference on Complex Systems (ICCS2004 talk). |
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Mindboggle: new developments in automated brain labeling Klein, A, Hirsch, J. 2003. 9th Annual Meeting for the Organization of Human Brain Mapping. |
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Fully-automated nonlinear labeling of human brain activity Klein, A, Hirsch, J. 2002. 8th Annual Meeting for the Organization of Human Brain Mapping. |
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Automatic labeling of brain anatomy and fMRI brain activity Klein, A, Hirsch, J. 2001. 7th Annual Meeting for the Organization of Human Brain Mapping. |
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Peer-reviewed publications |
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A reproducible evaluation of ANTs similarity metric performance in brain image registration Avants, BB, Tustison, NJ, Song, G, Cook, PA, Klein, A, Gee, JC. 2011. NeuroImage. 54(3): 2033-2044. doi:10.1016/j.neuroimage.2010.09.025 PMCID: PMC3065962. |
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Evaluation of volume-based and surface-based brain image registration methods Klein, A, Ghosh, SS, Avants, B, Yeo, BTT, Fischl, B, Ardekani, B, Gee, JC, Mann, JJ, Parsey, RV. 2010. NeuroImage. 51: 214-220. doi:10.1016/j.neuroimage.2010.01.091 PMCID: PMC2862732. [supplementary website] |
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Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration Klein, A, Andersson, J, Ardekani, BA, Ashburner, J, Avants, B, Chiang, M-C, Christensen, GE, Collins, DL, Gee, J, Hellier, P, Song, JH, Jenkinson, M, Lepage, C, Rueckert, D, Thompson, P, Vercauteren, T, Woods, RP, Mann, JJ, Parsey, RV. 2009. NeuroImage. 46(3): 786-802. doi:10.1016/j.neuroimage.2008.12.037 PMCID: PMC2747506 [PubMed Central] [supplementary website] |
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A new method for assessing PET-MRI coregistration DeLorenzo, C, Klein, A, Mikhno, A, Gray, N, Zanderigo, F, Mann, JJ, Parsey, RV. 2009. Proc. SPIE - Medical Imaging. 7259, 72592W. doi:10.1117/12.812170 |
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Mindboggle: Automated brain labeling with multiple atlases Klein, A, Mensh, B, Ghosh, S, Tourville, J, Hirsch, J. 2005. BMC Medical Imaging. 5:7. PMCID: PMC1283974 [PubMed Central] |
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Mindboggle: A scatterbrained approach to automate brain labeling Klein, A, Hirsch, J. 2005. NeuroImage. 24(2): 261-280. PMID: 15627570 |